Scaffold Ga0335019_0133682

Overview

Basic Information

• Taxon OID: 3300034066
• Scaffold ID: Ga0335019_0133682
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1645
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019308	Metagenome	230	N
F043899	Metagenome	155	Y
F068570	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0133682_1239_1643	F043899	GGA	LNIDDALDNLLKTTEIASVQKTEPRQRQAEWTPGVTWMGDEGTITTPPVEGESHPDWSGVLRMWGLDPEHFAVVEPVLFNVWGDTLGILNRQWKGKVVRKGRQETADIESLIAEIKKHKPRERKEIEGGASLVVC
Ga0335019_0133682_3_401	F019308	N/A	ASFKLDLFGDEELVNALKAGKEDTPKAIAQAIWEEANIIFAKSQILVPVDTGVLRGSGGVSAPQMGNQGYFVDIFYGGPAAPYALYVHEIIGNYHNPPTQAKYLEQPFMQSLAEIQNNISRRIIHILKSRSA
Ga0335019_0133682_866_1249	F068570	GAG	MAETQQPMSSSDAGNVTGSSSKAQRVRGVSDVPVVNPKINQDEFVSALDELVGVWKVQNGCSVGRITNELPEPARSKFKEALLNEKINSARLVELLATFNIAVGSDVMRRHRRRLFGKDGCKCPIEH