Scaffold Ga0335019_0088600

Overview

Basic Information

• Taxon OID: 3300034066
• Scaffold ID: Ga0335019_0088600
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2082
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003583	Metagenome / Metatranscriptome	478	Y
F042864	Metagenome	157	Y
F053888	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0088600_1_255	F053888	N/A	MNQSPIDHITVGDRPLRLSRPVLPHAARRLAGVLPQLNALNTAGKSQADAAEALGVSVGAVRSWIALAGIPWSNINRRGPYAKRN
Ga0335019_0088600_1387_1662	F003583	GGA	MAVVLLTGFAGLSALSSAYIAGYVLDQLQSTDALVMIVTDAGLKSDSADLERNMSTATLALKSVRDLGWALAVGCLGVGVAVFLRSRRQNA
Ga0335019_0088600_270_605	F042864	N/A	MSTKTKKAELVSDKAMNELLKHRVLDFRKAASVKDKDGYVKGIGSYALYGIDHARGQLVVLASEPTAGDFNKYVTAKAKAEVCALFDQVVEYRDAGTAKSPKVTILCWHLA