NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335019_0062324

Scaffold Ga0335019_0062324


Overview

Basic Information
Taxon OID3300034066 Open in IMG/M
Scaffold IDGa0335019_0062324 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2537
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041725Metagenome / Metatranscriptome159Y
F093765Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0335019_0062324_2145_2405F041725N/AMKIHALDPNDHLIAKVGIGIVQTVESHYAKYLANPNDRNAKAYQTWRLRLHRRLKNDRNLLEAINNARNLGLFDEDPGKTFWDCEF
Ga0335019_0062324_803_1351F093765GGAGMEIFYPVERLFANPRIFFAIANYLQGPDGETLKQSFYELMEYGFGDYEDPEEIEFAADEVCFSIDPEDGTLQMTLNTGMASILKPIEGEIKAQITNDHEMAATSAIYDRLITALVEANPEFEGNIALCSPPTPGNSYLRSSDGERFEGAFHLLSDPERQYSFNIDIVDVNANILKATYRPIS
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