NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335019_0060855

Scaffold Ga0335019_0060855


Overview

Basic Information
Taxon OID3300034066 Open in IMG/M
Scaffold IDGa0335019_0060855 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2571
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029440Metagenome188N
F084222Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0335019_0060855_128_523F084222AGGAMSKELYLSRLALEIEKHEERGNVRKAQELHNYFLKVANIRDMDPEAFADDYREEQDLMPQLNEEYYGEYQENPDEDIVDDSLGSDMYDHDVNEFKNDTSSNAMNLINSLREELQHNDLALKIIDILEEELD
Ga0335019_0060855_2190_2537F029440N/AMRPICDRINASDYCWTVFCCQGHFSGNQKGGLPYLVLLCVNEKRPDVLNKLYSAFEVDEKYDERFPLCGPRSNMMLISMGSKDENFTYVTIHFNAQGKNDQDYCVKIMDRFSRTI
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