Scaffold Ga0335019_0032340

Overview

Basic Information

• Taxon OID: 3300034066
• Scaffold ID: Ga0335019_0032340
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3610
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014121	Metagenome / Metatranscriptome	265	Y
F024768	Metagenome / Metatranscriptome	204	Y
F043358	Metagenome / Metatranscriptome	156	Y
F076003	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0032340_1792_1992	F043358	GGAGG	MKVYDYRIVEKLNLDTMKPYFIIQKYSCVMNEYHLHSNARIQTLEEAQEAIRLLRKYKEPIYHYVE
Ga0335019_0032340_204_410	F014121	AGGA	MTNTAYKVWEAFKAELTQPATDDMKQALASSIRVISSLIYRDGVLANEPWLTHTAQELNEIAGDVEAL
Ga0335019_0032340_2206_2406	F076003	GAGG	MKLTAHELAVITDTLTHSLAVSNWNGHYTAKSRENVRDLIAVIMNEMSVEIITDKPSFTLDADTGL
Ga0335019_0032340_3200_3469	F024768	GGA	MVMNYETEIIDGRKAIVRHFFKAHEIQVGSRWARADGSKGYVTIEGFNTYGNIDPWTEVVYSWELNGEKYTHKKDAFSFQCRYCLIVED