NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335019_0018520

Scaffold Ga0335019_0018520


Overview

Basic Information
Taxon OID3300034066 Open in IMG/M
Scaffold IDGa0335019_0018520 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4807
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049410Metagenome146N
F068425Metagenome124Y
F071219Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0335019_0018520_1019_1225F071219N/AMIHPHHPDNSILVIITSVIIQAGVWTSDWFGNMNLVGIYDTIYDFAKLGALVVSMWASYRVAKKNKND
Ga0335019_0018520_3039_3605F068425N/AMKPHHQLITFAALCLLLIIGLNHCAKEKPKPIPYDYKTEAELMKKQFGIEQAILLNQLESVNRRLQTANNAKDSIRKRELSLTNTNIALLKKLRDRLPKECDTVFVLCDEIINVKDSSYAALFNAFQLCDSVSTIKDSLIVAYKAENVTDSLLLKVSKQETKQQRRGKIAAWCVGGAMFLVWLFVGLK
Ga0335019_0018520_4435_4620F049410GGAMTRNTRYTNGKEVITFVKIDFIVIGGRKIDHVYFRRKDKHDLIMPLLEWNIKGKFEWEII

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