Scaffold Ga0335019_0013139

Overview

Basic Information

• Taxon OID: 3300034066
• Scaffold ID: Ga0335019_0013139
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5698
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F011761	Metagenome / Metatranscriptome	287	Y
F028717	Metagenome / Metatranscriptome	190	Y
F040626	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0013139_1212_2261	F011761	AGGA	MAYVLGGANNEADGFTKAISNFALRAMHESTGLVTMTNVVTPTQGNEFLVPNFAPITYQDYNANGTGGTYGTGNAVVQNPALGQGSITATPAVAQTAFDIFYGWTTSFQLAATLGAELGESFAEKVDQRVTKAFLSFKATPGNTNYTATPADGFPRVLELGAMELTAAGWTGGTQTQGFTANSVLQTIRNVKQNFKVARMPGTPVIVLDSNGDAATVTATPAGQNGSSLNRLLAELTGGAVSQSGGSNLSALGNELLATGRIESVYGCMVMFTTFLQATTRTVFGSAGQNVLVGAYFGDSALFTVMKEGLQLKSGEVPGGLQIWLTGVGYFGSGVGDLRRGGAINIQQA
Ga0335019_0013139_2315_2842	F002260	AGGA	MSVPYQRISNATVADIAFYDPAAERRAAALNVDWAPYFKVGSQEWLYKLEFGWWQKYCDTVLGAYYYANLPNGQLISSFNPSLLIKNDQTLIRLDTFGAILVFYESLVTDVSNMNEVDMQNYEFAQKRCENEWTKALQLMNFYDLNQDNPNGPTTKLEENWTADVDYFNGDRRYF
Ga0335019_0013139_400_1179	F028717	AGGA	MDQNSNFVGNDQAPGAIQADVSQENSEQNVNPGAIRKSTTQSLLNALSNASGTQFQSVEDALAYMARVGAQNSGGSAQPMVDTRQPQQPGRVTTNDLHEQFQKLQNDLSVKEQRLREKELDSDIQRAMGDRFDIDLMDYALTKVKSNIQWNQDGTYAIVNNKGQERYGSDGMPLTIQGLVTEVSQGNPKLLKQSQLNSGSGLRPGMGSFTGAVDESIPDYSRDPAAFNAWASKNGFGKKVGLKGLGVTASVASSSRKVL
Ga0335019_0013139_4391_4609	F040626	N/A	MSILMIDSLGKRYGLLPSEALNRSNTFDLYIMDAALTFENYQHKKAMNGGKDPIPDYTSDELLALMSKVKGQ