NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335019_0013139

Scaffold Ga0335019_0013139


Overview

Basic Information
Taxon OID3300034066 Open in IMG/M
Scaffold IDGa0335019_0013139 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5698
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002260Metagenome / Metatranscriptome577Y
F011761Metagenome / Metatranscriptome287Y
F028717Metagenome / Metatranscriptome190Y
F040626Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0335019_0013139_1212_2261F011761AGGAMAYVLGGANNEADGFTKAISNFALRAMHESTGLVTMTNVVTPTQGNEFLVPNFAPITYQDYNANGTGGTYGTGNAVVQNPALGQGSITATPAVAQTAFDIFYGWTTSFQLAATLGAELGESFAEKVDQRVTKAFLSFKATPGNTNYTATPADGFPRVLELGAMELTAAGWTGGTQTQGFTANSVLQTIRNVKQNFKVARMPGTPVIVLDSNGDAATVTATPAGQNGSSLNRLLAELTGGAVSQSGGSNLSALGNELLATGRIESVYGCMVMFTTFLQATTRTVFGSAGQNVLVGAYFGDSALFTVMKEGLQLKSGEVPGGLQIWLTGVGYFGSGVGDLRRGGAINIQQA
Ga0335019_0013139_2315_2842F002260AGGAMSVPYQRISNATVADIAFYDPAAERRAAALNVDWAPYFKVGSQEWLYKLEFGWWQKYCDTVLGAYYYANLPNGQLISSFNPSLLIKNDQTLIRLDTFGAILVFYESLVTDVSNMNEVDMQNYEFAQKRCENEWTKALQLMNFYDLNQDNPNGPTTKLEENWTADVDYFNGDRRYF
Ga0335019_0013139_400_1179F028717AGGAMDQNSNFVGNDQAPGAIQADVSQENSEQNVNPGAIRKSTTQSLLNALSNASGTQFQSVEDALAYMARVGAQNSGGSAQPMVDTRQPQQPGRVTTNDLHEQFQKLQNDLSVKEQRLREKELDSDIQRAMGDRFDIDLMDYALTKVKSNIQWNQDGTYAIVNNKGQERYGSDGMPLTIQGLVTEVSQGNPKLLKQSQLNSGSGLRPGMGSFTGAVDESIPDYSRDPAAFNAWASKNGFGKKVGLKGLGVTASVASSSRKVL
Ga0335019_0013139_4391_4609F040626N/AMSILMIDSLGKRYGLLPSEALNRSNTFDLYIMDAALTFENYQHKKAMNGGKDPIPDYTSDELLALMSKVKGQ

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