Scaffold Ga0335019_0010830

Overview

Basic Information

• Taxon OID: 3300034066
• Scaffold ID: Ga0335019_0010830
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6251
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034165	Metagenome / Metatranscriptome	175	Y
F056554	Metagenome / Metatranscriptome	137	Y
F098561	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0010830_1012_1350	F034165	GAGG	MSGSSVTVTLGKNVVVAGVANARSCTVTNSASDVDVTKFGDTSRKFRKALIEQTIELECVDAPGVSLGGSFTIAGTTTGNATYICTNISQSQPLDGIVTYTVSGTRTTPASA
Ga0335019_0010830_320_682	F098561	AGGAG	VAITLGKDCSIMLDGGQIFSARNVTLTESARTIDVNAYGSRYAAVYSTGYECSVSVELNDAADLGTAFQKMHTGGTFTVNGGAAGFSFLAVMTGISETDPIDGVASFVLEGRMTDPALVR
Ga0335019_0010830_682_999	F056554	AGGAG	MAITLGKDVSAEPPFGAGVISATYTEEAETIDISNRSSVGAAVGPGKKVAAVGFTTKTWEIECHDAAGLIAALEQNATTGWSVMSVSENIGVDGAVTFNVTAKEF