Scaffold Ga0335019_0010005

Overview

Basic Information

• Taxon OID: 3300034066
• Scaffold ID: Ga0335019_0010005
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6491
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008616	Metagenome / Metatranscriptome	330	Y
F008811	Metagenome / Metatranscriptome	327	N
F012447	Metagenome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0010005_2516_2923	F008811	AGGA	MATTILSGRQLILSVNGVNYSEQITSSAINFDTERLTFDTLAGKAYKYIDSNVTLDIEFLNDAGATPNSLYKVLWDGTESAPDTTIAFIMTLRTGVTLTGFVLPQYPSITGSGADVQTCSVSLQVVGIPTEDLTA
Ga0335019_0010005_2955_3266	F008616	AGG	MLKLQISWELETGEKFDEWTRPIELAMAEKELYNNKSIVRVLMDESTPSNQLLLFLGHKIQQRVTKKIESFDVWKTKVISIAASDFETANFTKPEVLGEQQSS
Ga0335019_0010005_3357_3824	F012447	N/A	MAKQIQIVKVDKDYRSLLRAFSKMDDIAKNDMKQIAKDLAERGANYAKGAANSAPYNVKQAVAVAQSIKISKSDKAPSFSIGGNRKVGSSAFSAGYVIMGNEFGSKQYKQFPRRSGKGGKEGWWLYRAMSRFQPTIAREWLQGFEKVKDAWTGRI