Scaffold Ga0335019_0009559

Overview

Basic Information

• Taxon OID: 3300034066
• Scaffold ID: Ga0335019_0009559
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6625
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (35.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013514	Metagenome / Metatranscriptome	270	Y
F047649	Metagenome / Metatranscriptome	149	N
F072267	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0009559_1178_1363	F047649	N/A	MRYYESRTYEHQCDFDAKNRAQKASQDYYKKWINLRKEVRNLVREQNLTITPEFAKLIGL
Ga0335019_0009559_4092_4244	F013514	GAG	MKLEELQKFLTDNNITLEEYMRANMITDEDRKYFDKIWMDVIYKNLGEDT
Ga0335019_0009559_5994_6527	F072267	N/A	MIEPIGYKLNPNKLKGAPQSILPYVVGAFYYTEDFEYFDVIKPYLDIPEPPKSLEEIQKELDEKIDKRIERVKEQFNKLGYTQEYQYQVKFNRIFENFEYARKNGRPREKFTLVMSNDSLSVNTYISSNFVIKEGGEEVGYYTFGSGYLRYCMNKKPNFIVRFCMNKLLGFKWISTK