NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335019_0007002

Scaffold Ga0335019_0007002


Overview

Basic Information
Taxon OID3300034066 Open in IMG/M
Scaffold IDGa0335019_0007002 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7666
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000714Metagenome / Metatranscriptome924Y
F001781Metagenome / Metatranscriptome635Y
F013184Metagenome / Metatranscriptome273Y
F061853Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0335019_0007002_2_364F000714N/ATTDKVTSIEWDLHNARQAQKRVGVFEDKVNTVKNIIGEAYADSQDQDTLRAIAEALGIELTRTVEWTASIEVSGTIEIDLLSDYDTDYELESEITDSIYADSHHGNIEILDQEVCNVRES
Ga0335019_0007002_2660_2845F013184GAGGMRITLNKYSFVIRLEGAVMANNEKEAHEKINLHLNDLGDVDSARYDLNWPDVSWDMEYDL
Ga0335019_0007002_3454_3765F001781GGAGMKPEDKDKLNECLKILDTTDLGLSMVWLWTWSTITNILDDETYKAKVTQDQMWDNLCEAVEAGHGFSLEYGAEQHQDDVLEWMMNRDYIVDPEWEEEEEDADE
Ga0335019_0007002_7546_7665F061853N/ATLIGLLIALVAVAFAAYNSFSQLKDIDYDLFDTEEDEDD
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