Scaffold Ga0335019_0006425

Overview

Basic Information

• Taxon OID: 3300034066
• Scaffold ID: Ga0335019_0006425
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7964
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (64.71%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013514	Metagenome / Metatranscriptome	270	Y
F014121	Metagenome / Metatranscriptome	265	Y
F019061	Metagenome / Metatranscriptome	232	Y
F029435	Metagenome / Metatranscriptome	188	Y
F038911	Metagenome / Metatranscriptome	165	Y
F049575	Metagenome / Metatranscriptome	146	Y
F055721	Metagenome / Metatranscriptome	138	Y
F067687	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0006425_1252_1464	F049575	N/A	MRKMTKLSAADLMVIHNTLYKSLNVVGNSIWTQETRERVMDKVSIIMEQMNAEVVCGDVEPIVVSGDVGG
Ga0335019_0006425_1981_2157	F019061	GGAGG	MTEPTDTEILEFLLNQFQAHSLKMNGESDWKFMSSGFPMNHAKGQTVRDAVITAMRAK
Ga0335019_0006425_2605_2787	F029435	GGAG	MTKQELKELITPEFLSTLHSAVECCNWKVDMIETMEFCNWCYRLAGQPEPYYDVDIEMVD
Ga0335019_0006425_3206_3397	F038911	AGGA	MVMPEKVKFVTITRVIDARNGIHYLDAIDVNGNHWTAEMDSRQEKWLVYIKGWKKDPQQPLEL
Ga0335019_0006425_3834_4043	F014121	GGAG	MMTNTAYQIWETFKAELIVEPTEDMKQALASSIRVISSLIYRDGVLANEPWLTHTAQELNEIAGDVEAL
Ga0335019_0006425_5174_5413	F067687	GGAG	MTNLSPQTQTIIDAADEVFSNGGTIREGFAAALRVLADNVAPENYACFSGHREWDEALETRNESIREAILDIATELEAL
Ga0335019_0006425_6337_6582	F055721	GAGG	MSKEEYYKWIEENDTYPEHSHKWIVRTYIDSYDGTIEEFYRNFGTFETKEEAKEFIENYKVKYTTKGFITRYSIQGLCEVL
Ga0335019_0006425_716_868	F013514	GAGG	MDLEELQKYLDDNNITFEEWMRANMITDEDRKYFDKIWMDAIYKNFGEDT