NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335019_0006408

Scaffold Ga0335019_0006408


Overview

Basic Information
Taxon OID3300034066 Open in IMG/M
Scaffold IDGa0335019_0006408 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7975
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001900Metagenome / Metatranscriptome620Y
F005586Metagenome / Metatranscriptome395Y
F023534Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0335019_0006408_11_523F023534N/AMNGIRAKSGSGFDLTTASSIKSLEMFFTPSTLAANTLFYASQGATTRLAWNGSGALSKANISKVYVNGIDISSATNITSYFLDEEPSHVVLIFATPVTGTFKFNYETSGGLNNLYKNIALYEDELTAGKVETHFELYTGKPVETITESAITLTELPAVYYNNDWIVLQSV
Ga0335019_0006408_6878_7648F001900GGAMLIQAASGLERLMGGSKGNSLKDSTVAQISAYLYYNAHVISRLTTNKQFQSKFSELIFNQIDKDFGQYIDSLARTRPKSLHHVYEWGKTGNKSARLFDLNLGSQDGLSFKISYSFKPSVSFVPASSKFTRRHVFTNKASIMEEGRSLTISPKHSERLVFEADGETVFMPIGKSVTVKRPGGTASRNQFSLAHGRFFSGQLVNNSIKKSGFQQMFNRSMAKALSLPSNIKKVQYSFSPNIIRGQADASLAAAFGGVL
Ga0335019_0006408_7672_7974F005586N/AMIELRKFLWNELKTRNIFDEENYWSDNLDENIIPIVPVQQSPEMNQFLSGKKHIVYDKIGISYEDNWAICCEQILFTIYSTDFSEINEVRNFMTDQFRRMD
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