Scaffold Ga0335019_0006110

Overview

Basic Information

• Taxon OID: 3300034066
• Scaffold ID: Ga0335019_0006110
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8152
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.55%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007690	Metagenome	346	Y
F018001	Metagenome	237	Y
F019478	Metagenome	229	Y
F025032	Metagenome	203	N
F036239	Metagenome / Metatranscriptome	170	Y
F038242	Metagenome	166	N
F087181	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0006110_1561_1884	F007690	N/A	MLTIKNILKLQGQPLVDGWETNNIYEGNHNDTYIFELVKRKPYPIHNELCTIMLERTGHKIFGQPGLSYFFIYNSQRTNISASADWLADKDNMIERLEYMIMNKENL
Ga0335019_0006110_2890_3228	F038242	N/A	MLTIKNIKELELNFCHQRGLREITETQNRLCENFYSFHFGPISDGNGWNKEIEVRLGRNLKGKDYEIFVMGLHLATRHFVTIDDVKTKGGLASEISKVLAKAEHWWKNEVTK
Ga0335019_0006110_3555_4130	F087181	N/A	MSFGEIVFAMVMSGVFGLWVYGIIITDGDTMRRIFWDNTAIGWIWREYFSKKKKAKQAPPHFTMGSNSMYINQPLPQPTAFNTSSLNVPHMNHIGKPLVIKNWDRLAGMATMVFGRRWIVVQAFYASSYEFTLQTGGMTKSVTFSIYGDMYDSHRVSVYCQGRTEIMDVGICKDPNRLLHEVTYTFNEKFR
Ga0335019_0006110_4130_4432	F019478	N/A	MILKIHNTNRMVGTIFWNRRFTCLQVHETDTNYRFQFDDSEVPSRYVWIEVSKIGRMDGDGDWTYSLNYIRCNQHLITAKWFGDWKNVTKTFGDALKKQF
Ga0335019_0006110_4485_4982	F036239	N/A	MKIKGWEKISGLTYKGYCIVNPIHDANEEGYFATVLNLNQVYRPKWDITLSAYAVKGVVTFSILDNVTQHLLAKVHLTKVNIETLQQFREQYEMLVDDILEEAQSYVKKATTNINGGTTGIINQVQSSGSNVLYGSGSSNPFTQAHIIQTLQTLQQQIDDYNKKL
Ga0335019_0006110_590_940	F018001	N/A	MLTIQNIGDLNGAQLNDWKVLTAGEDNRPELGKNIYIITFARIDNKGVMLDDRAGVIIDRNINPLLKGYHIKVVYDSWDYEIHTTTWPALTIKGKDAFFGMILYRINEEYYKRNSK
Ga0335019_0006110_7542_7910	F025032	N/A	MISLKSILEGESNVDKFTFKQRDAGGVRPSYQNTKLVKQGSAGDYVKYNVMVMGKFGGTIYYNKADKTMIANGGESNTTFPPKRFKDIKDAIDYVGGNSTRSYNTNIPLDGMDTSFGTARYV