NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335019_0004747

Scaffold Ga0335019_0004747


Overview

Basic Information
Taxon OID3300034066 Open in IMG/M
Scaffold IDGa0335019_0004747 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9191
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015080Metagenome / Metatranscriptome257Y
F082582Metagenome / Metatranscriptome113Y
F101038Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0335019_0004747_2874_3203F101038N/AMELTNSFPPVDYTINKLKQFDYIQFSADAIKFAATVSAIVVAVVSYGWTAFQLWWDDNGEATQVNFIRFVVNVIDFVAAIVIAIPKIYRWVKLNTNRLVDSLFFQVALA
Ga0335019_0004747_4834_5034F082582N/AMTVDFSKDVMLGMLRKGATGNQILDILDVIVPQDVVEMTREYVCDQLGIADCPENDDEIEAYLAAV
Ga0335019_0004747_7844_8092F015080N/AMFDQLQFEAHPIPGAIQAMYKFSNEWSISVVSGLPGSGLYGNVTDNTYEVAIFRPNGNMTEDVIGWNTKAEVSAMMKVLVQL
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