NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335019_0003831

Scaffold Ga0335019_0003831


Overview

Basic Information
Taxon OID3300034066 Open in IMG/M
Scaffold IDGa0335019_0003831 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10097
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (76.19%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007029Metagenome / Metatranscriptome359Y
F010307Metagenome / Metatranscriptome305Y
F027413Metagenome / Metatranscriptome194N

Sequences

Protein IDFamilyRBSSequence
Ga0335019_0003831_3851_4972F027413N/AMEIVNIDNSAFDIDVTDSLTLELKNSSGTYVPVFGGTVSDFGISVRSPEEVGFITIGNILAVGSLAKLTKALFPDALPKVEDGTQIFDILNELLINSWFEVAPALQWQDYDPTITWANAENVGLGEIDQPGLYEMISRSADPFSSYNLCAQIAQSALGNMYEDKAGRVCYADADHRTAYLSANGYTTISANYAIPSSVKSILQIGKIRNSLVFNYGNNYASQATALDAASIANYGRYQRSVSSNLHNLSDVNDVMDRELGLRAIPREQLQAITFRLDNSDLPDAERNKLINVFFGEPIVISDLPINMFNGSFNGFLEGFAIRATPQFVDITLTLSPTDFSLVAPQWDTVSPPSLIWTGVNATLEWENAFGGLT
Ga0335019_0003831_6287_6451F010307GGAGMDKTTFIEITDTLTNEVTEHAIIDRGNGEFTSMLKSTYEAMQAEQSTPSVTNGD
Ga0335019_0003831_7607_8212F007029GAGMGFLDNYEDVNARIKRFRSEFPTGRLIAYIEDIDVIKGTVLVKAEAYREYEDALPSAVDYAFGNVAHLTNNMKKWLIEDTVTSAYGRVIGLLTPSEHARPTVQDMQKVENLPADPDPWSNRAAIEDIPTMATAVSDISTQLGGELVAEAPRCSHGTMIWKQSATGSPKSWAGYFCTERTKATQCTPRWYVLRSTGKYEPQV
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