NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335019_0002165

Scaffold Ga0335019_0002165


Overview

Basic Information
Taxon OID3300034066 Open in IMG/M
Scaffold IDGa0335019_0002165 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12983
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (86.49%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000652Metagenome / Metatranscriptome959Y
F004924Metagenome / Metatranscriptome418Y
F006112Metagenome / Metatranscriptome381Y
F018539Metagenome234Y
F022196Metagenome / Metatranscriptome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0335019_0002165_10844_11104F018539AGGAGMKNVYTANTAKAKIVYYKDKETYKIIFAFNVHIKQKDNGDIVHIFPTQKQCNYVSGDISYEELQKDKLRIIEQAKKQMRTDYVEFV
Ga0335019_0002165_4676_4816F022196AGGAGMTKSIPSSTGGTITFTKTGLIHKAGSAYSGKIAAQEAKQKPAKKKG
Ga0335019_0002165_6264_6419F004924AGGAGMRDAILAKLEEVEVMLQAATLDGESLTETEGYTELEFALSRLTEAVDYYVD
Ga0335019_0002165_7454_7666F000652AGGAGMKAYVTTILRQEIEVPEGWEREDVYDFLAENQSFRTAFQGVSNEDQTARIVDIMVLEEEITELGEESYDA
Ga0335019_0002165_9925_10221F006112N/AMKEHKMKQDYTMYIYKRDRRCKTGERLFSTTVWAGRDAEAMRRECNELYDLYPATQGWRFECVPTMKTVRNLMTGADVEIPHDTPRSCDPSSELYWSM
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