NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335019_0001835

Scaffold Ga0335019_0001835


Overview

Basic Information
Taxon OID3300034066 Open in IMG/M
Scaffold IDGa0335019_0001835 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13949
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (31.03%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002333Metagenome569Y
F044444Metagenome / Metatranscriptome154Y
F074791Metagenome / Metatranscriptome119Y
F097198Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0335019_0001835_11796_12029F097198N/AMLQFEMGPEEAFWQEKMIRSIKECNSMSELKEMATLLTKIATMRQVAIKGLVKDAMDLMSNQVDRDILNRLRDSGPQ
Ga0335019_0001835_12320_13258F002333N/AMSTQTQLELNAAQAAIYTRSNIRRAFQDFDDTEVSGIYLRGDDCLVVHRDGSEQTYNRELIKVAHTNYTHRLKDFFSYLGPNYRGPSVWHNNAYVLFKGWNYSHALGHLTSNAKLQAHWADKFIHVSDTNKVLHLLQSDQTDIGHLVAPDGLRLPNRPIDFDSDMEADQSTPVVGEPWCSCGSYQRQLSNVSDFAAEIEGFKPWCIHLSWFNKYRELLCKRTEARNASPSGTPEKCVAWWYAPPADHISDGRFVLLYTNSGAQAPLSHWRTYKPKDIFTQHDAWDLFFNMMEAGYVPFPGTALPQLKSAIKK
Ga0335019_0001835_13255_13485F044444N/AMKEAIIEVSDDILEYARQLATQPLMTKLMRYDLDLPEDTHWELVKLAAELKMHHEDYALNVLIGHVESELDRKAQA
Ga0335019_0001835_13650_13949F074791N/AMIMSIDTYGLSSEQYTEFFHKNIRAAAKLYLDTCNILSSEGVGNVDFKTVSEMYQEAVYTTNDDCRRYQKSNNPEALKENDMYGMVPSHQEIIDMVETLV

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