Scaffold Ga0335019_0001726

Overview

Basic Information

• Taxon OID: 3300034066
• Scaffold ID: Ga0335019_0001726
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14276
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (51.02%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018913	Metagenome / Metatranscriptome	232	Y
F024768	Metagenome / Metatranscriptome	204	Y
F037191	Metagenome / Metatranscriptome	168	Y
F077968	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0001726_10071_10325	F024768	GGAG	MNYETEIINGHTAVVRHFFKPHEIQVGSRWIGSSGSIIVVEGINQYGSTDPWYEVVYSWEENGVKKTHDKDQFAFQCRYCLIVE
Ga0335019_0001726_12230_12457	F018913	AGCAG	MTTNKERAEELLKVICKSEAHNTAWMLQEVLQHLRKQLSGQNPVDLNDELNVMYVLGYDDCLKDIDGIIDELELL
Ga0335019_0001726_9289_9465	F037191	GGAGG	MIVTEMIEKLHQYPPDMEVQITDGFQYKFYKGNFEFQMFEDVDGSTFVDIGVGGYDYD
Ga0335019_0001726_9458_9637	F077968	GGAGG	MTDTWKKWNIWTSIHLFEWCVYAWSNLMYPHIHGFEDEERMRELFWYYINYGNCNTYYD