Scaffold Ga0335019

Basic Information
Taxon OID	3300034066 Open in IMG/M
Scaffold ID	Ga0335019_0001298 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034066 Open in IMG/M

Scaffold ID

Ga0335019_0001298 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16123
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (22.22%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

16123

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (22.22%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005349	Metagenome / Metatranscriptome	403	Y
F014139	Metagenome / Metatranscriptome	265	N
F022886	Metagenome / Metatranscriptome	212	N
F025032	Metagenome	203	N
F030763	Metagenome / Metatranscriptome	184	N
F036239	Metagenome / Metatranscriptome	170	Y
F038242	Metagenome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0001298_12271_12639	F025032	N/A	MISIVKIMEGESNTDKFTFKQRDAGGVRPSYQNTKVVKQGSAGDYVKYNVMVMGKFGGTIYYNKADKTIIASGGESNTTFPPKRFKSIKDAIDYVGGNSTRSYNTNIPLDGMDTSFGTARYV
Ga0335019_0001298_12950_13261	F030763	AGG	MLVIKNYKKIKNQYFGDWQIGKVEEMKECYALQAFNANTKKSITMAILREPMMDEAEYDTAYRISLVEDDKKPSNIIDDVIYHSVLEDMELFGESLTHYLNTL
Ga0335019_0001298_13263_13568	F022886	GGA	MITIKNWDKLTRMFRSQIDIGELELYYEITYYYPTLPSNEYYRITLSRISPPQQDHPHKDEYLMLCGVSEYWLNKKELENVDSVYEAIVDVVVRHNLKVKV
Ga0335019_0001298_13878_14378	F036239	N/A	MKIKGWDKISGFTYKGYSIVNPIHDANEEGYFATVLNLNQVYKPKWDIELTLNNNTGVFTFRILDSATQLLLAKSHLTKTNINTLQKFREQYEMLVDDILEEAQSYVKKATTNINGGTTGIINQVQSAGTNVLYGSSSLSNRFTPAHLLQTIKDLQQQIDDYNKKL
Ga0335019_0001298_15625_15963	F038242	N/A	MLTIKNIKQLELNFCHQRGLREITETQNKLGEQFYSFHFGPISDGNGYNKEIEVRLGRNLKGKDYEIFVMGLHLVTRRFVTIDDVKTKNGLASEISKILAKAEHWWKNEVTK
Ga0335019_0001298_3364_3711	F014139	N/A	MGMLKVNWKKYLNSSNPTINKYLSDFGDSFIVQTLQRITLAHQKRKSQIILIRFKQSDIVATIESKDYVLALEHLLQLCVNLEKYELCREIHTTINLIKSKRRMRVKSPPLVTSS
Ga0335019_0001298_5685_5918	F005349	N/A	MAYFVHKQLIPVDRSMGDPNWAKRQIWVLKLNANDTIDEFETIEEAQTKVGLLMNEDPSGRVYKVVQKNEDGTFSDI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335019_0001298

Overview

Ecosystem & Geography

Associated Families

Sequences