Basic Information | |
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Taxon OID | 3300034066 Open in IMG/M |
Scaffold ID | Ga0335019_0001298 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16123 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (22.22%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005349 | Metagenome / Metatranscriptome | 403 | Y |
F014139 | Metagenome / Metatranscriptome | 265 | N |
F022886 | Metagenome / Metatranscriptome | 212 | N |
F025032 | Metagenome | 203 | N |
F030763 | Metagenome / Metatranscriptome | 184 | N |
F036239 | Metagenome / Metatranscriptome | 170 | Y |
F038242 | Metagenome | 166 | N |
Protein ID | Family | RBS | Sequence |
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Ga0335019_0001298_12271_12639 | F025032 | N/A | MISIVKIMEGESNTDKFTFKQRDAGGVRPSYQNTKVVKQGSAGDYVKYNVMVMGKFGGTIYYNKADKTIIASGGESNTTFPPKRFKSIKDAIDYVGGNSTRSYNTNIPLDGMDTSFGTARYV |
Ga0335019_0001298_12950_13261 | F030763 | AGG | MLVIKNYKKIKNQYFGDWQIGKVEEMKECYALQAFNANTKKSITMAILREPMMDEAEYDTAYRISLVEDDKKPSNIIDDVIYHSVLEDMELFGESLTHYLNTL |
Ga0335019_0001298_13263_13568 | F022886 | GGA | MITIKNWDKLTRMFRSQIDIGELELYYEITYYYPTLPSNEYYRITLSRISPPQQDHPHKDEYLMLCGVSEYWLNKKELENVDSVYEAIVDVVVRHNLKVKV |
Ga0335019_0001298_13878_14378 | F036239 | N/A | MKIKGWDKISGFTYKGYSIVNPIHDANEEGYFATVLNLNQVYKPKWDIELTLNNNTGVFTFRILDSATQLLLAKSHLTKTNINTLQKFREQYEMLVDDILEEAQSYVKKATTNINGGTTGIINQVQSAGTNVLYGSSSLSNRFTPAHLLQTIKDLQQQIDDYNKKL |
Ga0335019_0001298_15625_15963 | F038242 | N/A | MLTIKNIKQLELNFCHQRGLREITETQNKLGEQFYSFHFGPISDGNGYNKEIEVRLGRNLKGKDYEIFVMGLHLVTRRFVTIDDVKTKNGLASEISKILAKAEHWWKNEVTK |
Ga0335019_0001298_3364_3711 | F014139 | N/A | MGMLKVNWKKYLNSSNPTINKYLSDFGDSFIVQTLQRITLAHQKRKSQIILIRFKQSDIVATIESKDYVLALEHLLQLCVNLEKYELCREIHTTINLIKSKRRMRVKSPPLVTSS |
Ga0335019_0001298_5685_5918 | F005349 | N/A | MAYFVHKQLIPVDRSMGDPNWAKRQIWVLKLNANDTIDEFETIEEAQTKVGLLMNEDPSGRVYKVVQKNEDGTFSDI |
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