NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335019_0001298

Scaffold Ga0335019_0001298


Overview

Basic Information
Taxon OID3300034066 Open in IMG/M
Scaffold IDGa0335019_0001298 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16123
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (22.22%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005349Metagenome / Metatranscriptome403Y
F014139Metagenome / Metatranscriptome265N
F022886Metagenome / Metatranscriptome212N
F025032Metagenome203N
F030763Metagenome / Metatranscriptome184N
F036239Metagenome / Metatranscriptome170Y
F038242Metagenome166N

Sequences

Protein IDFamilyRBSSequence
Ga0335019_0001298_12271_12639F025032N/AMISIVKIMEGESNTDKFTFKQRDAGGVRPSYQNTKVVKQGSAGDYVKYNVMVMGKFGGTIYYNKADKTIIASGGESNTTFPPKRFKSIKDAIDYVGGNSTRSYNTNIPLDGMDTSFGTARYV
Ga0335019_0001298_12950_13261F030763AGGMLVIKNYKKIKNQYFGDWQIGKVEEMKECYALQAFNANTKKSITMAILREPMMDEAEYDTAYRISLVEDDKKPSNIIDDVIYHSVLEDMELFGESLTHYLNTL
Ga0335019_0001298_13263_13568F022886GGAMITIKNWDKLTRMFRSQIDIGELELYYEITYYYPTLPSNEYYRITLSRISPPQQDHPHKDEYLMLCGVSEYWLNKKELENVDSVYEAIVDVVVRHNLKVKV
Ga0335019_0001298_13878_14378F036239N/AMKIKGWDKISGFTYKGYSIVNPIHDANEEGYFATVLNLNQVYKPKWDIELTLNNNTGVFTFRILDSATQLLLAKSHLTKTNINTLQKFREQYEMLVDDILEEAQSYVKKATTNINGGTTGIINQVQSAGTNVLYGSSSLSNRFTPAHLLQTIKDLQQQIDDYNKKL
Ga0335019_0001298_15625_15963F038242N/AMLTIKNIKQLELNFCHQRGLREITETQNKLGEQFYSFHFGPISDGNGYNKEIEVRLGRNLKGKDYEIFVMGLHLVTRRFVTIDDVKTKNGLASEISKILAKAEHWWKNEVTK
Ga0335019_0001298_3364_3711F014139N/AMGMLKVNWKKYLNSSNPTINKYLSDFGDSFIVQTLQRITLAHQKRKSQIILIRFKQSDIVATIESKDYVLALEHLLQLCVNLEKYELCREIHTTINLIKSKRRMRVKSPPLVTSS
Ga0335019_0001298_5685_5918F005349N/AMAYFVHKQLIPVDRSMGDPNWAKRQIWVLKLNANDTIDEFETIEEAQTKVGLLMNEDPSGRVYKVVQKNEDGTFSDI

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