Scaffold Ga0335019_0001242

Overview

Basic Information

• Taxon OID: 3300034066
• Scaffold ID: Ga0335019_0001242
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16407
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032541	Metagenome / Metatranscriptome	179	Y
F061656	Metagenome / Metatranscriptome	131	Y
F061834	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0001242_15439_15789	F032541	N/A	MNLLNEIKQILSEVTKVNFKGHKFVLKIDVNEDPNKKGVKVQFLPTTFTGMSKKEQDDIAMELGAKLNQGLSSLGLAVERDRELKDKTIIGFFIYIEYLNKIIINALNQAAQSSND
Ga0335019_0001242_15801_16013	F061656	N/A	MPQFCFYSKNNPTQEPVGVLHAASREEAIKFFSLSKQLPVNDFLTIFEVKNYTYGAQEGIAENTKQLLKG
Ga0335019_0001242_16036_16371	F061834	AGGA	MARDVIEKKLFIENIILLREIEDRRDFMEEELGLDMSIYEEKFLQIIENLFKIHFSKEQFALIQYYIYQVPTLMDWDGKIDLSDGKDMITVDFETPEQVWNVITSIKEVKK