Scaffold Ga0335019_0000944

Overview

Basic Information

• Taxon OID: 3300034066
• Scaffold ID: Ga0335019_0000944
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18541
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (21.88%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071168	Metagenome	122	N
F072271	Metagenome	121	N
F090313	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0000944_12401_12970	F071168	N/A	MTIRKALELGPEDTNAAILYTLKELVNALECKVTMRTAADFDDAMTVITENYGWTLDELRHCFAMIRTGRLGPENLYERFKARELYACMRQYADERARHRMRHAAKYDPDVQEVKPSSERTVQSLTAVADMLDLPPYKPTPGIFMADGEGQQGVPTAAHQTQSEAQGQEAHPRPGSEEGRPVVQQAGAL
Ga0335019_0000944_8173_8409	F090313	N/A	MARNHYTTNGPRVASTSMPERAPESFNAWQEELQWERDLERILEDFKYQLREKLRTAYYNNTRSQSVTSSDHQRIPQS
Ga0335019_0000944_9893_10093	F072271	N/A	MVTELYGIWAWIAGLLVLGYLLVNNIDLRWRLAKANARIRNLESKLWTNDVEAILDEILGDPDERA