Scaffold Ga0335019_0000608

Overview

Basic Information

• Taxon OID: 3300034066
• Scaffold ID: Ga0335019_0000608
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22710
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F001991	Metagenome / Metatranscriptome	607	Y
F002085	Metagenome / Metatranscriptome	595	Y
F002997	Metagenome / Metatranscriptome	514	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0000608_14317_14997	F000934	GAG	MSLQTILSICESVGINDQRFVGQTLSRNQKLTTSEILTVVPFEFELRPMNYLFYSQNRTTLNSLRIPDKSLPQYLNFGQTGWLNYVKYQGDMSAIEIGNCLWLTASANKTLVLGALPALASTAYLFRVGDFVQVGLYSYIVTADVQRGSGSTVNVPVHRNLIATLATTVACVAGQYGTTVAMGGTTYTGVTFQVVLREYPNYSLVPTANDSFINWSGPFRALELVL
Ga0335019_0000608_14994_15599	F002085	GGAG	VNVITPVQNTSNIRIADFLRIYTTSGAYLMTTAPSNMTVPAVDAAPFQSVGTLLAIGQIQRDIKSTANDTTISLSGIDTSMLGFVLGQNVKGSPIQLWHGFFDTDGALITTGGTGGLYQYFSGIITSFAISEQWMDEARMYVGTISVSASSIQLILQNRIAGRYTNNSSWQFYNSTDTSMNRVPFIETINYQFGKDAPANS
Ga0335019_0000608_20850_21347	F001991	GAG	MAVFSKNTLIQVSGFNNPIIAGELVYQQKTYWNLVFTGTNNVPVNLTGATINAQIVRRQISNLQDTRNGLTFDISDYSPPPSPVPMTISNRNDAAGSFTLVINQTSWDVIAGDPELDISAQNPVCFSGRVKIGFPSAVGVPEDDSIIFLLFLVRSDGVVNTTAGV
Ga0335019_0000608_9250_9594	F002997	N/A	MSIRRFEAIDVNNLTFGQSSFGQQSTTQTKWFATRAEVSEVANSLKISEKYRVYQDLVNFTINYTPNARTIVNNQNSYSIRWRDHDWRITDARESNDRMKVKLLCYRTDPVTAV