Scaffold Ga0335019_0000508

Overview

Basic Information

• Taxon OID: 3300034066
• Scaffold ID: Ga0335019_0000508
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24553
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (33.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002843	Metagenome / Metatranscriptome	526	Y
F015720	Metagenome / Metatranscriptome	252	Y
F028149	Metagenome / Metatranscriptome	192	N
F037116	Metagenome / Metatranscriptome	168	N
F078232	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0000508_12306_13931	F028149	AGGAG	MASGNVISCKQFQSFLVSQEPVYDKEILKDIRPFDGLIGYYNTGSFDAYSGTTHTFDRFNSVFPNVTGAWENPTGAACTGTPCDTEENKIGWGFTRSEYSLEKQAWGSDLLCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAMELSGYNVTSNTQPGAFACSAGLPAIAFSWVGTGYSVLRVTDTAGAPIAFATLGQLTPDILRSRVTRQYFLGAVQAGKDGYDSLQLHTDKETFRYLSKENPLLISAWRFGEFAPAAKEFYKYGFMGYVGDFMVKVLQFPLRFSSIPATPGNYRLVLPYRNVLATSGIRSEFNPDYNAAQYQISYINNPRALRVLPFRPEAVNPNMPFLVRDYGGRWKFATNDLGADCSGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHRLCVPQALIIAGCTADPGDLAQNYNSANSVCNPVIQFTAVANDAGNFVVGTTGIMCNDNIVTNAGISEATLALFVAALQVIWDAEFGAASGTWSIVDLTSKLIQLSSNNLTPPTEVVPCTNVTLEFS
Ga0335019_0000508_14334_14741	F078232	AGGAGG	MPVLTPQELADTGGCFNCMETVLQQTILLSLLQQIQVASFDAARTTASPGGVLTATATAAANPSRRRFVIQNQKTTEHLHLKFGTGCTTADYHYTLLSAATAGAHASSLTFEGYTGAISVATATGTPSYTFAEFV
Ga0335019_0000508_16164_16424	F002843	N/A	MIVPVNIVAVQCNQNNSLFVTTGVDYDSDGAVVGSEITSQYTLNPGDDLTGQPTEVVNIANALWTPAVVEAYKAANPVVEAVQPTE
Ga0335019_0000508_16424_16597	F037116	N/A	MEPTNSTATSPGLSLAAAAGATAASFLPILTDWVRLVTAVVGLLCACYGAYKLFKSK
Ga0335019_0000508_16594_16788	F015720	N/A	MKNTKTTLAGIGAILIAVGGALRAAFDADPSTNIDIASTIAAVTAGIGLIMAKDAEKTPVAPPV