Scaffold Ga0335019_0000201

Overview

Basic Information

• Taxon OID: 3300034066
• Scaffold ID: Ga0335019_0000201
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38249
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (39.06%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053244	Metagenome / Metatranscriptome	141	Y
F057377	Metagenome / Metatranscriptome	136	N
F072275	Metagenome	121	Y
F105029	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0000201_15779_16030	F072275	AGG	MNPKQVAATAVMLAWVFLAISFLSGCVAVPMPPFGERVGEAGTLHIRATVRFEPRLSESQSANRNLWNALGEFQKTLPALKDK
Ga0335019_0000201_2123_2524	F057377	N/A	MTKPLAVFSTRDLKLATILLTLGFEPENPAAPATRIRRDSGDETTVFHFLANHPTSGQQANQVMEWFRDADIFLEKNPEHPVAYILAALKNRDTLVSVVKATPRQLVFERNGKIVSISENATEADKKRFAKFL
Ga0335019_0000201_33653_33817	F105029	N/A	MKTSEKQLYNALSYLVIFGKQLKNTLEELTFAIEKSESLLIAHNLKTSTRLKKP
Ga0335019_0000201_566_814	F053244	N/A	MRLAITLTRTGSTWKVESLPSVPLGEQLAAFKAKQVAGELTADETLVVSLGDTLKRHICKAKPSAPAVEVEAEEESPKPKKK