Scaffold Ga0335019_0000184

Overview

Basic Information

• Taxon OID: 3300034066
• Scaffold ID: Ga0335019_0000184
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39522
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (65.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035299	Metagenome	172	Y
F064500	Metagenome	128	Y
F068569	Metagenome / Metatranscriptome	124	N
F092039	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0000184_11153_11434	F092039	GGA	MTQQTIEFPPQEYPVALIYWADACGGDAGWLTLDDVEDDGEVLVQSVGFLVPVGDAGSKENHVTLLQSIHDGEGINLFYIPVAMVRKIVLLNA
Ga0335019_0000184_13704_13952	F068569	N/A	MDTKGKPMIKVQTLILRIFGVFGSSALAAVAGGAIFGVELWKSAAIAGVVAAGKVTESLLRAWSEDGTLTKEEVAAAFGKKG
Ga0335019_0000184_24813_25070	F035299	N/A	MTTFTPPTDNYVNWALPGERGILAVLRPGRRGRNVFKMNDGSFTEFQPSYQEDIAITYHGGHIHTITAQEEADLIAAGYGDYIEA
Ga0335019_0000184_8281_8451	F064500	AGCAGG	MSEYIHQDDAYEWLQEKGIQFAEQDFAKVQAERDELKLKVLELSTEVERLSRELAR