Scaffold Ga0335019

Basic Information
Taxon OID	3300034066 Open in IMG/M
Scaffold ID	Ga0335019_0000052 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034066 Open in IMG/M

Scaffold ID

Ga0335019_0000052 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	68047
Total Scaffold Genes	115 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (37.39%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

68047

Total Scaffold Genes

115 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (37.39%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F004278	Metagenome	445	Y
F006619	Metagenome / Metatranscriptome	368	Y
F009805	Metagenome / Metatranscriptome	312	Y
F012964	Metagenome	275	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0000052_11948_12259	F004278	N/A	VSQTFLKDVIEAIIKWWKKTWFEAKLKARLTMIEWENQWEATRELEEQNKPIYIEHEIDPELQTGESRKLGGAMELRAPWYNDPIQPERQDGVQEAPGMDDRL
Ga0335019_0000052_12451_12636	F009805	AGG	MDVHVGLGEWTYSLMSRMMNAMDGDCFVLPTLMHLHAYTILKEASFPDRDFKVVIKNSTE
Ga0335019_0000052_1431_2144	F001018	N/A	MTQITQAKLKDLTVIKLYEHYNALEKSLPLLTPESQELAKAELESCANLRSEKIDRIYYAMASHEDALERIKKEGDLITQSKRHHESQLRSLKGLLNYLRRVLPLDSNKITGRNYQFTLVKKKELTVEVSSDPEFWHTTERELYCVEEEITTTKRVVLRSMSGEVLDQRTEPKTTTKVLPNLDAIRSAYQEGRQLPHGVKVVQEYSVRSKRIFGEPRVEMVSSEYPGELLPEDSSAD
Ga0335019_0000052_27833_28153	F012964	N/A	LGKQFATMEEQIPPSQPPMPQTLEGQITPEMLAQMKTRARELAIQQTIAQQAVIPQQQPQVVYVRRNLTVAEILLVILLSCGIVTGIQWSWNIVTNVLPRVEIKVR
Ga0335019_0000052_35_484	F006619	N/A	MEADQSTPVVGEPWCSCGSYQRQLSNVSDFASEIEGFKPWCIHLSWFNKYRELLCKRTEARNASPSGTPEKCVAWWYAPPADHISDGRFVLLYTNSGAQAPLSHWRTYKPKDIFTQHAAWDLFFNMMEAGYVPFPGTALPQLKSAIKKQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335019_0000052

Overview

Ecosystem & Geography

Associated Families

Sequences