Scaffold Ga0335019

Basic Information
Taxon OID	3300034066 Open in IMG/M
Scaffold ID	Ga0335019_0000033 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034066 Open in IMG/M

Scaffold ID

Ga0335019_0000033 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	81177
Total Scaffold Genes	110 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	50 (45.45%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

81177

Total Scaffold Genes

110 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

50 (45.45%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013514	Metagenome / Metatranscriptome	270	Y
F036765	Metagenome / Metatranscriptome	169	Y
F047649	Metagenome / Metatranscriptome	149	N
F049575	Metagenome / Metatranscriptome	146	Y
F063620	Metagenome / Metatranscriptome	129	N
F072267	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0000033_77634_77960	F036765	GGAG	MTIRETELLKLFAKADKLQLNVVVREDKDGDYVVRIYEMFRQEGFDEKVVITQKGESDWNKGAYGFDAMMDILDEMLEEKRQEEIKAQKRQELLARLTDEEKKLLGVK
Ga0335019_0000033_78282_78494	F063620	GGA	MTNHIIPKVAYIPLEYHMSVEDFLEVWKDMEMEEKPTQEDYDTFILDRGKSYFYDMRGEIENNIRLIEDN
Ga0335019_0000033_78491_78676	F047649	N/A	MRYYESRTYEHQCDFDAKNRAEKASQDYYNKWINLCKEVRNLVREQNLTITPEFAKLIGL
Ga0335019_0000033_78977_79138	F013514	GAG	MLVDSIEELQKYLDDHNITFEEYMRANMITDEDKKYFDKIWMDAIYKNFGEDT
Ga0335019_0000033_79125_79337	F049575	N/A	MRKMTKLSAADLMVIHNTLYKSLSVVGNSIWTQETRERVMDKVSIIMEQMKAEVVCGDVEPIVVSGDVGG
Ga0335019_0000033_79321_79857	F072267	GGA	MTERIGYKLNPNKLKGAPQIILPYFVGAFYYTEDYEYFDVIKPYLDIPEKPKTLDEITQEFDEKIDKLIETTKEKFECSKYFAGKRYNQKFDKIIENFEYARKNECFPQKLTLDYSKFCATGSSVETSFVIKQGNNHEGYYTIGNGYLRFYMTTKPNAITRWFMDKCLSIRWVDEKND

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335019_0000033

Overview

Ecosystem & Geography

Associated Families

Sequences