Scaffold Ga0335019

Basic Information
Taxon OID	3300034066 Open in IMG/M
Scaffold ID	Ga0335019_0000027 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034066 Open in IMG/M

Scaffold ID

Ga0335019_0000027 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	86364
Total Scaffold Genes	153 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	108 (70.59%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

86364

Total Scaffold Genes

153 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

108 (70.59%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010766	Metagenome / Metatranscriptome	299	Y
F011487	Metagenome / Metatranscriptome	290	Y
F024314	Metagenome / Metatranscriptome	206	Y
F038479	Metagenome / Metatranscriptome	166	Y
F087107	Metagenome / Metatranscriptome	110	N
F095473	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0000027_30419_30814	F087107	N/A	MSIHSSLAFGADPVTMQWSVVRGDTGTLRVEFYEDNEVDYYNTDGWIFRATAYDQSGNVLDALDCEPGEGFVDITAYPSVTKNWGLKYSSVVAQLPFDLQVIIPQDIEDTVWTPVIGTIQVLGDVTPGGTL
Ga0335019_0000027_33108_33275	F024314	N/A	MNEEQKLTPEQAQAVLLFQIEQKLRFVIAKQVEQKFHGTYHGASHDIANFIRNMA
Ga0335019_0000027_34713_34907	F095473	GAG	MTTCQVINCESTELVYSGTDAFMLGINTETYCYKCANAYAQIDRAMTKVREEYLASVSTLTTSD
Ga0335019_0000027_35105_35302	F038479	AGGTGG	MTTLTNNYKGLSLDQKIAIAAQMVVDGKTVSFRGASADTYNKVMLLANRIKQELEFPQCPCEECN
Ga0335019_0000027_39475_39645	F011487	N/A	MYEDEMFDEYYSTTCPSCQENSVDEYEEKCTHCLLEEMSAHYNEDIALEMSLGLDY
Ga0335019_0000027_69530_69637	F010766	AGAAGG	MRIKIIKAVVKLLGYEWGGDKLNAPIWTVKEKKKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335019_0000027

Overview

Ecosystem & Geography

Associated Families

Sequences