Scaffold Ga0335019_0000017

Overview

Basic Information

• Taxon OID: 3300034066
• Scaffold ID: Ga0335019_0000017
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 96797
• Total Scaffold Genes: 163
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 125 (76.69%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F000263	Metagenome / Metatranscriptome	1424	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F001464	Metagenome / Metatranscriptome	689	Y
F001781	Metagenome / Metatranscriptome	635	Y
F002501	Metagenome / Metatranscriptome	553	Y
F013888	Metagenome / Metatranscriptome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0000017_22147_22419	F000263	GAGG	MNQEDIGLPPHLQRMVNAGVSGLDIIHGELKNLMLIAEQELADAIEREEESEEAMDSMVRTECEGALDTLVALYELTYQLSFAIGARNEA
Ga0335019_0000017_22409_22732	F001781	GGAG	MKPEDKDKLNKCLEILDTTDLGLSMVWLWTWSTIQNIVSDDNWTAQATLDEMWEHLCEAVEAGQGFSLEYGAEQHQDDVLEWMLNRGYILDPLDSLDDEDEEDASDE
Ga0335019_0000017_37414_37731	F000473	N/A	MFIDKDKNHFKHGINQWNGEPNKPVFYTKEMAQRVREINKPVFDLLMDIVMYPDFLAIRLYEDNFLQYEGTKKEMVIDYVNKVKRLIESYGVRCELEGAPSERVL
Ga0335019_0000017_51117_51776	F013888	GGAG	MSTIGILPASGKASRVGGIPKFCLPISDERSLLQWHVEQMLEVCDEVRVSTRAEWVPIIQNMDMNIKLIVREPSTMSDAVKFMVGDYNDTVLVGMPDTYIHGTQNNIYKEMNKVSGDLVLGVWECSEELKGRVGQVLLSGDKVISSMDKTNNCDYSNMWGTMLFRKNLIRYIDPELEHPGKQIQEWIDMSLDIRAVKPGGKYMDIGTLKGLKQLYKEME
Ga0335019_0000017_66575_67057	F001464	GAG	MARKTRSKTRKKFLYFFLNGKIHKVLKSSRAKDELIAWSYEDKKRMLYSYTQVEKSMENAYSIKDVSALLNKHKVTIEDYILEGKIKVPARIYPIGNPDSSWSKFMFSHKDILDLHEFILEAGHSSKVPSRAEILALLKHNLILYTKTEEGKFVPVWKAE
Ga0335019_0000017_67003_67188	F002501	AGG	MYCQKCNGRVFIDRVFSQKLHMELFCVMCGKRWMINKETSALGRWLEKQDQRHAKSFFIS
Ga0335019_0000017_92857_93369	F000258	GGAGG	MTANYKLDASSEIRKFLWSQLLNYEIFDASDYYSDNIGKEIIPIIPVQQSAELNQFLSGKKHIVYDKIGMSYEDNWLICCEQILFTIYSTDISEINEIRNFMIDEFRRMDESARDVRNSDLVSDLFKFHNIFVADISPTSPSEEIQGFLSSDVVLEIKYSRITDNSGRFI