Scaffold Ga0334827_028789

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334827_028789

Scaffold Ga0334827_028789

Overview

Basic Information
Taxon OID	3300034065 Open in IMG/M
Scaffold ID	Ga0334827_028789 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 1-5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2217
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0475	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010891	Metagenome	297	Y
F057821	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334827_028789_1275_1571	F010891	N/A	LLLFKENEMTTKKQLTPEQRVMLNEIVNGAFSSIAIHFIGDNLAKGIHKVADATQRTTDVTARVAGTAQVCAIPAAKQAWTGFTGLFAKKTAATPASL
Ga0334827_028789_1704_2216	F057821	AGGAG	MSIDMNLLSVNADALSTNQNNELPGWNVPSRMAFHIVLDGRLDINGKLSPVIRRPYRDTSRPYNQRRDFMAHETRQILDDRMPDGVEYGIVTFEGGSKAAREETRRVVEHLSRGWTDNGKRFRCVYGHAADTGFMLFVDAKSSIHGPDDLGIHISSDPKAAKRVRRFFSAH

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