Scaffold Ga0335001_0245222

Overview

Basic Information

• Taxon OID: 3300034064
• Scaffold ID: Ga0335001_0245222
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 990
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012105	Metagenome	283	N
F041721	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335001_0245222_3_404	F012105	GGAGG	MIPLAIRRHNLQDLTLGQSVMLTVPSCEERQIRRAVGVLNAGRSDGLRLKTLRTPNGLRVWLVECVEVADSTEWKTGKSRRFPGRDVVAVRKSVVKLNEWARVLRRPYRFRVIVRDSVPVVLKLPKNKTIRIRR
Ga0335001_0245222_401_823	F041721	GAG	MESLRAFAARERGHLLEHCPPIPVVSDWFLEVDRDGRLTGQVISGACTSHVQYDPRFRAVFRHDCTFYSSGLGEWLHVVETFWRQTLRQWQAYRRLGEVLQAAEDCTPDTHEQAWRAVYECLGWNPDTAREHYLERRAGK