Scaffold Ga0335001_0109400

Overview

Basic Information

• Taxon OID: 3300034064
• Scaffold ID: Ga0335001_0109400
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1578
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024555	Metagenome / Metatranscriptome	205	Y
F038242	Metagenome	166	N
F087181	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335001_0109400_1297_1578	F038242	N/A	LREITETQNKLGEQFYSFHFGPISDGNGYNKEIEVRLGRNLKGKDYEIFVMGLHLVTRRFVTIDDVKTKGGLASEISKILAKAEHWWKNEVTK
Ga0335001_0109400_98_652	F087181	N/A	MSFGEIVFALVISGIVGLWIYAYIVSDEVGRILWDNTMLGWGWKKLFGEKKKAKQAPIPSFGHIPPPPAMPTAFNTSSLNVPHMNHTGKPLVIKNWDRLAGMATMVFGRRWIVVQAFYASSYEFTLQTGGMAKSVTFSIYGDMYDSHRVSVYCQGRTEIMDVGICKDPNRLLHEVTYTFNEKFR
Ga0335001_0109400_984_1295	F024555	N/A	MLTIKNIEKLTQYGAVVDWRVGKVVTLDSSYLIRLYKHNRRETMQVNIERTPIGEGDTALYELWFWEDDSGGAKPIRRLLRKCDFELGPSYVIKNIENMMTLK