NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335001_0064114

Scaffold Ga0335001_0064114


Overview

Basic Information
Taxon OID3300034064 Open in IMG/M
Scaffold IDGa0335001_0064114 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2119
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003541Metagenome / Metatranscriptome480Y
F023791Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0335001_0064114_14_826F023791N/AMQHFREALTMPAYQVYSKGNRYERFSLQNGVKPVMELYSVAIPAYVNVTYEVMIWTSFTEHMNEIVEQFQYATDRYWGNENGFKFKCKIDSFDTTQEVGEGSERVIRTAFNIVANAYLLPETHAKKPVVQKEFSKKRIVFGIETDLTGNLFNNPSVYNEYAQVIDFVAIRGSQMATFVNANTVKLINVKKPILPSELIGIFDTDNWFRIYINGELISPGSYENFNGTIIFNQNYTYTYNGATNEIIFTFSLTYPLDANDEIAITGKFEEL
Ga0335001_0064114_1568_2119F003541AGCAGMARLIPRKQIEEQQNISGSLSIKENVNVGQDAIISGSIFVSQSFFFGNDTGSKNEITGSVFLTGSLVIDGELRTAAPNTILSVTSSNSLISVDTQRYAGILAKDFGANLPTLYVSSTDGDDTNDGRSIQYPLRTIKRAAALSTPGYDGRYGFNTGSVSNGYVIKVQAGTYLEDNPVILPKNTTI
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