Scaffold Ga0335001_0040560

Overview

Basic Information

• Taxon OID: 3300034064
• Scaffold ID: Ga0335001_0040560
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2714
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070119	Metagenome	123	N
F071246	Metagenome	122	N
F072347	Metagenome	121	Y
F081267	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335001_0040560_1654_1890	F081267	AGGA	MSYEYHWVVVYDEEWGAFMVDVETTLLNLRDNSGVVYNKTTGKWEFLEEGSALEAEYYRLEEALAYNLTRLDIPKKVG
Ga0335001_0040560_268_510	F071246	AGGA	MGKTQTEGVADKIVALLADGRISQAQWRLWIPRRITEHNKMIIANAKNFADGINEVIADEQIGISKELIFDYQTGHQHGQ
Ga0335001_0040560_27_278	F072347	AGGA	MDNRTKAEILVQFTQDYFNSGEYEEFFDYNDLGIPLSIAITQDMVILTNEGEQLLEETWKELCLLFEANPDDEYESIDDLIVE
Ga0335001_0040560_813_1025	F070119	GGAGG	MNLNSYSAFDFILPNCLEPGDIIQWEEEIYTVKSFDLLSDGFIIYAIDEMEDDIELLIPDNTILSLMEEQ