Scaffold Ga0335001_0026089

Overview

Basic Information

• Taxon OID: 3300034064
• Scaffold ID: Ga0335001_0026089
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3429
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003965	Metagenome / Metatranscriptome	459	Y
F034574	Metagenome / Metatranscriptome	174	Y
F074801	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335001_0026089_1755_1913	F034574	AGGAG	MKITYTIWQGSLNKGTLTAATMKEIITTMKDLNEGNTSLKFEHMVHKIEQVA
Ga0335001_0026089_2833_3030	F074801	N/A	VLTTTAQLANNMGILDKLEASLFPEEAGNGEIIQDEIPFEVEERLNKEAIEKYNERLKYMEEHGI
Ga0335001_0026089_927_1106	F003965	AGGA	MNSNVIIQVCKTHVPNKSAISDVNDSQFTFCEVCENNIERWYNDTDPERLSMWTNWQVS