Scaffold Ga0335001

Basic Information
Taxon OID	3300034064 Open in IMG/M
Scaffold ID	Ga0335001_0003937 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034064 Open in IMG/M

Scaffold ID

Ga0335001_0003937 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8911
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (53.85%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

8911

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (53.85%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F010237	Metagenome	306	N
F011919	Metagenome	285	N
F013988	Metagenome	266	Y
F021105	Metagenome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335001_0003937_1037_1348	F000722	N/A	MDTLEPSEVTEEPYPETGITEETRQMYPENYSDKYNKVFKEFIDDIMRPNHVARPIDRLDDHEILLDELTIIYDAHMTIGGEQNRFNASVIRAAINVIISCTK
Ga0335001_0003937_1413_1808	F011919	N/A	LDAPGLQSLHKSKADPMSDLQLFAPTRGLGAYREECAIDRNTVIISPSAKPTSASAALNALPKSGSKRRRVYEYLKQTGGATDEEIERALGISGNTVRPTRGSLVKDKFVYATDLERPTLAGNMAIVWKAR
Ga0335001_0003937_2332_2499	F021105	AGGA	MKNPDQEYDRLHDHMTAIARERDYAVHTVDMLKKQLEELQDALELAYEALRRVMP
Ga0335001_0003937_7895_8521	F013988	GGAG	MAVYSVTQKYLIDNYAVVQLLTDAEIELGASVVLAGVDATFNGTYTVRALPQYLYVGIDTEGDLLYDVNIPIANQVLVAKTADDVTRTAATGTLTITQTCTWVTAANLEDWLGIGTATAADAAFLTVCAAAASQFCWRRRMEAGYVDSLTTVPSQDVFLGTQMYGGALYRQRGSVDQFASFQNMGTTPVMGLNGMIRQLLGIDRPQVA
Ga0335001_0003937_8521_8886	F010237	AGG	MAVPVYTDLFNEGFDDLVTKLSTVVGLQVNNDPRNITPPSCFVNIDSIDGYNYNVAKLNFTLQIITLGPGNLDAQKSLLNILAQIYALDIGVVSGRPTNLDIGGSTLPAYELSVSTVVQT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335001_0003937

Overview

Ecosystem & Geography

Associated Families

Sequences