Scaffold Ga0335001_0002594

Overview

Basic Information

• Taxon OID: 3300034064
• Scaffold ID: Ga0335001_0002594
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10927
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium RBG_16_35_7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014513	Metagenome	262	Y
F048800	Metagenome / Metatranscriptome	147	Y
F101028	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335001_0002594_7288_9135	F101028	GGA	VIKAGEGQSETIVNDIENGNFQGAYPYRAVKYGSSDGILISVSGVIYFLKITNNFATAYKIIEGNDPGMMHTWFVQAEDRVYIQNGYQNAIAWDGVLGTIGASQITNNDYCEIVSIGSTDFTLIGAASNTIGVKFTAIITDTQKGTGTGTVKLPAYRLNPYQKKMPIGTIMEYAFGRVFVSDRFNQIYASDIIYGGGFTDTKNTENFTEIGYWAEGGAFSTPAMMGNITGMKAMPELGYNLRGQGQLVVLTGAGAFSMDVSLPRSQWNTSNIQRISLLGRGCTSPYLALVNSELWFRSHDGWAFYSNTQSEFNRYFSLRKLSRDVNKWVSNDTPWLKQFASTMFFDNYLISTVAPQTYRAEGVKGLNRYHRGMVVLDLDQSSTPAPDAQLQFRWNGLWTGIRPTQLLTALIQGEKRGFGFSFDADNKNRLYEFTIAQGDDYGPNGTRQIESFFTTGRYDFNRSGATNKFLRKKITGGEMWMSEIKGQVDSYVDYRADSNPCWSELKVPTTFGCDPCSPKVTECFPQRGGNRYKRYKFNTPDPSECNDLAGIPSVEGSEFQIRVTLTGAATVDRVRLMANIKNNDDSPVGDCPEENQECEPFLCCQEKYWNYNIVN
Ga0335001_0002594_9139_9630	F048800	N/A	MDNADSSPAITFPNVPDDFCPTGNWQNVFQVFIDEVLSNGTILVPGLGDVTPAEINQINETLADQQNQIDALEEEVGPLVTVRYGVITGVPTADSIQTVSFADLPDANYAVCITPICGATIGADATPLFALNTGSKTTTGFSIRIENNIAGITSLDWMAIHTA
Ga0335001_0002594_9848_10810	F014513	GGA	MADTLEEMVELVKGFVGDSGTCSYERGVKAVNQARRLLWNKRAWTSQEEYVQICCVNDCFTLPARYEQIKLAWIGDNSASLADEWFNATNAFALHADHSCHRGIVEVGGLHVLFRDYTTHPYQIGVMAEEAEDIGVELMFEAQDQYDTYHKVKVATANPPTLAKSGLLVKGIRSVTKPITKGRIRVYAYDTALEAKTLIAIYQPNDANPTFRRFKAPKTCECITLYASKKYFDLTDPKELVEFIPDAMIYAVLALNSRENRKAQEFLSNLSLAVQEQEKEMENLEIPTAGPIRFANYSRAENLIGSDLLSPSPNDYFLYR