Scaffold Ga0335001_0001417

Overview

Basic Information

• Taxon OID: 3300034064
• Scaffold ID: Ga0335001_0001417
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14450
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (32.56%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039944	Metagenome	162	Y
F046179	Metagenome	151	Y
F056323	Metagenome	137	Y
F072111	Metagenome	121	N
F093535	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335001_0001417_1908_2051	F039944	AGG	MKASDFFLALALVALLGIAIAVTSGAFGGPSDLEMRIRASEPLSLQK
Ga0335001_0001417_3498_3809	F046179	AGGGGG	MMPQWESEALALITGAGVSVDDAPWVLECIQKAADDIAEHDDDLQFPLYMEYHGNDKAALCDIDAEAFSDVLACLGVDLHRLETLWERKHIDPPTDDVDWSLE
Ga0335001_0001417_4058_4249	F072111	GGAGG	MKSQATLAIAIFAHLGLFLFVDSLFEAPTRWKMWAFYGSSLLSVAVWGAYVIKDDWDGKGGAA
Ga0335001_0001417_4620_4811	F056323	N/A	MHEIAEDLKLPPAVVALWAADGMIPHTMRDGLPLFDPVAVGKHIAEQLNNLNKYDDGNKPTTN
Ga0335001_0001417_9402_9653	F093535	N/A	MKKYQEIENIIGDIWYQNPRWPSTFSVCCNGCGNQARGGRECIYCLEKELSGLTSKEDARQFISAVGQVLMAEEALREHSKPF