Scaffold Ga0335001

Basic Information
Taxon OID	3300034064 Open in IMG/M
Scaffold ID	Ga0335001_0000779 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034064 Open in IMG/M

Scaffold ID

Ga0335001_0000779 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18907
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (28.12%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

18907

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (28.12%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012669	Metagenome / Metatranscriptome	278	Y
F028145	Metagenome / Metatranscriptome	192	N
F037223	Metagenome / Metatranscriptome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335001_0000779_1238_1408	F028145	N/A	MKIFLVFFINLAVSLLSSILLYKLFKVDVSPTIISIGLIVGYMFLPQRFHDWIAEK
Ga0335001_0000779_242_763	F012669	N/A	MTEQIYMNLKDAVKRPKFDLKNINRANTQFKRLVDNYQKWNEDEGLNEPRSTYEDDIIECLGHYDLDGYQLAEYLHDYKYVEPNTELVDILDDALFVKSSLEREMFAQWVKENFLTIPEDVVGKKVNAKQNLRKYEDHYITGIRPDTYQVTVSENATKQGGWIVGFENVTFVN
Ga0335001_0000779_8272_9741	F037223	N/A	MTLFEHILIEGRVDDFKKMLSQRFSIDYVQKIINRDTSKNHKNLLWIGKILKTEPDINDEDLFKNLEIFNKVASSTDLYSFRDYSTFLNFLQKKSKEVQMGKMALIKAGSRTIKDDKRWLVVAPQTHDASRYFGGGTSWCISTSNDRYWKDYYYAQTIVMIKDRTKKPDNDLFKVAIVGNAYEQLWDTRFNDKIDKIRELSKHVDLYNVNDNKLSGDQKINYLGQLPEDLIEDLMNYFNDDEIYERQNDHYYELARERYDNGGKEELLKSLFNTTVAYFDADVDFYADDFGDLMSRQFADEIQDGNWDEFLSELWGACMTYQGVEDDSFYAEVNTRNFKNLISDTSYDLQTYLDLAKEILKNEDIANMDNIIKDALIKTSDNGDPYTVIKRQANQLKDTNYNDIILSSLNAYNVKNNPTFLQGQRSLGPDFMGIVNKFKPKNIEDVIKVLSINPRAKDMIDQIQRYRRDLYESKKKRSIKYRDFYKFKG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335001_0000779

Overview

Ecosystem & Geography

Associated Families

Sequences