Scaffold Ga0335001

Basic Information
Taxon OID	3300034064 Open in IMG/M
Scaffold ID	Ga0335001_0000475 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034064 Open in IMG/M

Scaffold ID

Ga0335001_0000475 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23374
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (28.21%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

23374

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (28.21%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F014974	Metagenome / Metatranscriptome	258	N
F015718	Metagenome / Metatranscriptome	252	Y
F033400	Metagenome / Metatranscriptome	177	N
F081250	Metagenome	114	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0335001_0000475_1198_2055	F014974	GGA	MIKLKDLLLENDDIFIPRRIEDRQTKYNNITQKEVNAIVDDFIAKRYNMSLTLSPKDIDDNGYEYGTLQYNGDFVVPDKLKHTPSNLLLNNSNVTKLPDNLTIGHYDILSVVGCYKLHQLPKGLKVKIVEAASSGVRVIPDDIECDTLNLDSAAYITELPLFKHYIETINLLSAVRFRILPAKFTCGTLNIIDTPVERIPDNVKIKYLKASNCKHLKSIGNNCEIDNLILINSTIESIPTDIKCSNYMNIRNTPFVNQLLKKQGTSEKVMEELKRSYPYVNDFGI
Ga0335001_0000475_221_760	F033400	N/A	MNTADNIDNSFFTYKFDGKKVKTNKLVKNLNDDIALTQAINLFREQNNMTKARNPYSWWKYVLATITYFPKGVEYITVINILNDIAGVNVSKSTATLLARATAGAAPCVVRREYTVRLPDLAYNTKLTASFSRKTAKTKKGRPAFQFKFANTKDARDTILSSAPEMKSLFDLLDKKIVE
Ga0335001_0000475_9048_9500	F015718	AGGA	VKIVPIIRDGKIVMGDINEQYPVTNVMWKYVNDMTLGEYLNSLGVDYKSYGFIKGFPRSFYLRIGFYEPGYVITTNSHLYDSLVTVRDNDPWHRKFKVFPVGSNLYGNDVYYYFSLMAKGLSSYGSDIYNCYVHVTTVNGKSIYCVDVLN
Ga0335001_0000475_9567_10619	F081250	N/A	MNFNYRDFFIHNDDLHIIKEQLSIVDETKASFKDALEPNAKAVWDMYQIENNDQKIAEDLGINLPTVQKIIGICEKKFIENKTVPEIANEMKLAASTINVVLNNAIPDWERAQDRHFIKNAEEIYNLHKQGKNPDEIVNLINQNRKPYLQIKLDKVNLVLKIVDIATKQMENDGVTNTSEIRRQINHTITFITINRLIKKLGIGEIRYRHKFTTEQDAFILYSYLQRIGSTETAKQFNMKFSTDSNKLNIGDNAIYARIKNTILKSNSESEISEYVLELLRNYKNEYFSTVNIEDPKTKKLLKNYTPPETIKGKDKTGTGTNRDMSAHLGTVQTNFNTMVTNLRNAHTIR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335001_0000475

Overview

Ecosystem & Geography

Associated Families

Sequences