Scaffold Ga0335001_0000410

Overview

Basic Information

• Taxon OID: 3300034064
• Scaffold ID: Ga0335001_0000410
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24771
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (78.18%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002764	Metagenome	531	Y
F009140	Metagenome / Metatranscriptome	322	Y
F011742	Metagenome	287	N
F012211	Metagenome / Metatranscriptome	282	N
F020138	Metagenome	225	Y
F040534	Metagenome / Metatranscriptome	161	N
F044970	Metagenome	153	N
F046258	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335001_0000410_2871_3095	F002764	AGGA	MKEPEDEAFEELSRRQGDWGLQGSRKHQIMRYAENNARNEVIEEVAQHIEKCTLAFGKDTIQSFTVYIRGLKTK
Ga0335001_0000410_3082_3342	F011742	GGA	MTTIEFVPFDWVDDDFNPEIDRIEVDYQWHEADDSVGLIAYCEKTVKWMRFNLEIKDITDELSYADLAYLKHEIQRNDKEIADERT
Ga0335001_0000410_3568_3744	F020138	AGG	MNQQQTNRLNAFWQDVEAHKALNLSSPESVLVILKSVALDALLAAQDIEQIGVNDDTR
Ga0335001_0000410_5794_5979	F044970	N/A	MLIAIEQKTKALENKCLNKNYAGFTADIQTIQSQLTLLTMWITQAQCEQVRENTYRILNK
Ga0335001_0000410_5900_6205	F046258	GGAG	MKHLTIAIKRVLSYFEIVTLQPSLPILLKDKTPAKMTLPTISITDPKFVYKSAACTDITQTFEKAKNERLQRLRNNADSNRAKDQSTGEQVSKQKLRRVHG
Ga0335001_0000410_6259_6609	F012211	AGGAG	MPTDEEQFKYECWAIVQELDPEDIADAIGDSIALVEAIKANHVEDVASIVMNRVELKVRRRAELRVFDVVKTQWIDDIEELQHYRNLRIERVQKALDERKIMEAKMDGPFQQMFDE
Ga0335001_0000410_6669_7115	F009140	N/A	MQGIGVFPSAKNYKYHHTEVFGDKQMRLNLTHRTLLKRLSSGPRTMLEMTHSYTDNNSVSFHYQRYLPDLEQFGYVINFQEKWHLTEYGRMEMNRAISGAAMRIENGSVKEPYDGKELRRNVFRRGCYDFLQLPSRFGDNFVPRKTPT
Ga0335001_0000410_7481_7714	F040534	AGGAG	MNTDKSGEGRILSLSTLGEPMSEQEFEDKMNTYELDQQYAEYIMERRNVGNGEMLIRFMERGELYEDFKEHIMWGGK