Scaffold Ga0335001_0000184

Overview

Basic Information

• Taxon OID: 3300034064
• Scaffold ID: Ga0335001_0000184
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33576
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (87.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031023	Metagenome / Metatranscriptome	183	Y
F041637	Metagenome / Metatranscriptome	159	Y
F082341	Metagenome	113	Y
F100534	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335001_0000184_10335_10607	F031023	GAGG	MLIDRRTVAVVLVCLAVGWWLGSSPSSPINPTPQRPVLQAVGRLARIAARLGLWMAMAAEPPPQADGRQLVHSPAVDAEGHRVVDHGEGW
Ga0335001_0000184_14277_14504	F082341	AGGAG	MASETMAGDREAAGAIAGMQELYGRPLPERGQAIRGETKGKRWSGECFHADQFRVIVEIDTEVFLTASPSDIEIE
Ga0335001_0000184_7489_8001	F100534	GGAG	MPDSLDGIVSTTTSLTQTQTGTVGSSTRAVSVSSAMPLNSVSGPIADQLWVSNRSLAVGASETLDLLSLADTIQGATGIQTMRQVRLVRIANSETVTGPRIVVGPSGTNGWGRVAGEVGPGGELLAVQQTHAWGVTATERGVTIRATGPTGSVAYSIVIAGTATTGPAGY
Ga0335001_0000184_8003_8362	F041637	N/A	MTPDQLQSAVLALIAGARLKSAGGLTVSEFGSLTVEVIRLAVAGLDTISTLDGAAKKSWALSCVGTLFDAVADSCVPFVARPIWWVIRPAVRTLVLSAAGGALEQILALTRAAAPEPVA