Scaffold Ga0335001_0000178

Overview

Basic Information

• Taxon OID: 3300034064
• Scaffold ID: Ga0335001_0000178
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33945
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (34.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031848	Metagenome / Metatranscriptome	181	N
F046179	Metagenome	151	Y
F056323	Metagenome	137	Y
F072111	Metagenome	121	N
F098930	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335001_0000178_12473_12811	F098930	N/A	MNESLEKQPSNRKLNQKRKFGFGSGRKRNQLQDKKINIRVSLSVETFKRVDSLAKRIDCSLSSAVERLIRTQESEGIEPTQEVNWDEFKAKRQFYQLTDVLDASFRRRGRRA
Ga0335001_0000178_15747_15959	F031848	N/A	MELLFNDLPEELSPRLKWQEKKGIKTMRRDDGKYVAYKTETRFNNSDETEVDAVIGLAKKLKLKLWSEEN
Ga0335001_0000178_18447_18641	F056323	N/A	MIRLFSLHEIAEDLKLPPAVVALWAADGMIPHTMRDGLPLFDPVAVGKHIAEQLNNLNKYDDEA
Ga0335001_0000178_18991_19200	F072111	GAG	MEKGGGRMKSQVTLAIAIFAHLALFLFVDSSFEGSSKWKMWAFYGSSLLSVAVWAAYVVNDDLDGGGAA
Ga0335001_0000178_19425_19739	F046179	GGAGG	MSRPQWETQALALITGAGVSVDDAPWVLECIQKAVDDIAEHEDADQFPLYMEYHGNDKAALCNIDAETFADVLACLGVDLHRLETLWERKHLDPPTDEADWSLE