Scaffold Ga0335001_0000066

Overview

Basic Information

• Taxon OID: 3300034064
• Scaffold ID: Ga0335001_0000066
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55574
• Total Scaffold Genes: 82
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (75.61%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005294	Metagenome	405	Y
F039525	Metagenome	163	Y
F042295	Metagenome	158	Y
F043830	Metagenome	155	N
F073237	Metagenome	120	Y
F085338	Metagenome	111	Y
F090290	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335001_0000066_20130_20390	F005294	GAG	MATILNTALVYDPRYHTFESWASLMVEQYAAQQLAIPDANTDWKEWASGLKAIDVFTNEGIPSPFIFDDWQEWAEALVNAVNPSVN
Ga0335001_0000066_29099_29326	F043830	GGA	MNPYLNTDEIKEAFRKIYLEETHDFLEEDLEKLADGFIMAAMPAIVKTERDMCIKFVNSLNTNVARALGEYRENL
Ga0335001_0000066_32044_32253	F073237	GGAG	MNLQDVLWYDTSKGRIGVLMVLDWHTEKLHYIMGVASGMNDNVDINHIYSGGMHLPDYVGAAFFFGDWE
Ga0335001_0000066_33039_33290	F090290	N/A	VYADTAVKENQLEKHLPYTTKSGLRIGCMYSPPPENHMSHDAEIIQMALLGIESEYSERKVLGFVAYIIFLMVLFTVLFALEL
Ga0335001_0000066_34436_34858	F042295	AGGAG	MSYASAKQRYAEKTTGFEDQPVSHNCFANGCPMAGGISTGGNWVCAYHHQATSDTWPRVTEALRDAEMVRVAINEVMKIDMISWGSAVNGYPPKWQEFAALFDNEPELQPTEHEKIRKTKYEYRLRNELAIRAGLAKRKA
Ga0335001_0000066_34855_35073	F085338	GAGG	MTKHDAQKILDEIRSGFGHAYTETCTLECLNLTGDLGAHGTVRSSGVDEPIREEGYRARLRQRAIMVARSKE
Ga0335001_0000066_39024_39203	F039525	GAG	MSETNMSPYIKGFNAGVDCVLTEIERLEKIAPINLKQLLKHLDPQRDQKTAPKPDKGAP