NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335000_0403169

Scaffold Ga0335000_0403169


Overview

Basic Information
Taxon OID3300034063 Open in IMG/M
Scaffold IDGa0335000_0403169 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)813
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030059Metagenome / Metatranscriptome186Y
F037700Metagenome / Metatranscriptome167Y
F071163Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0335000_0403169_136_426F030059GAGGMNDTINKNLTLIQEVATKALEEHKNSTERFGGVNYANLRVVDVWVKYSIHEEDLEYGVLIEECSPTAYDFQDYMLEYLKDNLPNNLGWSIYVELDW
Ga0335000_0403169_2_136F071163GGAMTKTQSALERVIIELDSWCDNWAPTSYNDPRISLRQIADRARDVL
Ga0335000_0403169_423_641F037700N/AMKKYRIKKETYNDTTRYYPQEKFLYCWYNIFAFDVYFDGGYDTLEEARKQLCEYCREPVVEYLDFDPTRDCK
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