Scaffold Ga0335000_0036156

Overview

Basic Information

• Taxon OID: 3300034063
• Scaffold ID: Ga0335000_0036156
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3608
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048999	Metagenome	147	N
F054866	Metagenome	139	Y
F066563	Metagenome	126	Y
F093536	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335000_0036156_1322_1564	F054866	AGG	MSRYTITHGSIAAVQYVTLPNNDKVTVTYALDGSERELPKLPLEVQAAVNRQFEAIFALPYDSRQAFIDNSIPFDVEVTA
Ga0335000_0036156_1900_2109	F093536	AGG	MQTSSNNFHSMRGHVADGCIIVAPSGKQFTLKNTLKGWMVYGADNLPISGHLPSAYDVEYFVVNGLQNS
Ga0335000_0036156_2176_2355	F048999	AGG	MLTISLHQKTDNDGWQTIKSLPIDSAQWGKIDRSWIDTLIESGSMVITIGHTMYSIDKN
Ga0335000_0036156_3173_3373	F066563	N/A	MILLAAGKGNLCRGFENVLDLYSEAHNKGFRPGDDLSILNIGLATTSSPDPSEPVRNSKRESIGNV