NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335000_0025048

Scaffold Ga0335000_0025048


Overview

Basic Information
Taxon OID3300034063 Open in IMG/M
Scaffold IDGa0335000_0025048 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4460
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F012108Metagenome / Metatranscriptome283Y
F037567Metagenome / Metatranscriptome167N
F059898Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0335000_0025048_2528_2905F012108AGGAMIKLELSVREALWILSKIESYDTIYDKITLAFEDALKVNRNKTVTITGGMNLDNRIHCIKAIRLHTGWGLKEAKDWSDVLVGGWKYDTFVPATHGTKNSITLSTPEAAENLLRDLTEKGCEGYLS
Ga0335000_0025048_3653_4357F000325AGGAGMKTADGNDKLGKGCIVVSRPVGDTCPSDCDYLNNGCYAEATENQYKNARTAGFANIITEKHKIRAMIVDAKRRNKSIRIHERGDFFLNGELDLDYLANWTWACESILADGDSLPDMWFYTHIYDSRLVSLEKYMNVYASVHDDNDMGEAMAQGFKLFAWCDSDMKIAPKRPKSKAKAEAWRKELPKLVVLNGEKFVTCPEIRRGRSVITCTGTKDSISCDMCVKGLANVLFPAH
Ga0335000_0025048_511_771F037567AGGMEWISFFGPRRPINGQKVYYFGPDIGVWRGRYEIHLNDLVSPHILICEERPGVVDRMDAPWWMPYEGQPKPARPETDYPKDYPNDN
Ga0335000_0025048_761_943F059898AGGAMTTNDMTRDDAIVYLINFFNSRMTAASKFHRDKAKTLISTHEIAVSELVDKYVRLVLENS
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