NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335000_0002181

Scaffold Ga0335000_0002181


Overview

Basic Information
Taxon OID3300034063 Open in IMG/M
Scaffold IDGa0335000_0002181 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16494
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001881Metagenome / Metatranscriptome622Y
F008358Metagenome / Metatranscriptome334Y
F013889Metagenome / Metatranscriptome267Y
F017818Metagenome / Metatranscriptome238Y
F077968Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0335000_0002181_1509_1769F017818GAGMKTEMNKDAYYDWIAENDTYPEHSHKFFVALYTKYEGIEGYHRYLGPFDTREEAKVFAADYKDKYTKPGFISMTRIFAMCEVVKDT
Ga0335000_0002181_2458_2655F001881AGAAGGMSDRAKEFMSAVWEQRNNQGADTEEKLVAAILSIAAEYVRSYTAQNDLIVLDKNDLLQLAEELKQ
Ga0335000_0002181_4048_4272F013889GAGGMSRTFRRTEGMHRYAYRFPHTFSEIRQLDGILHEEDLEGLPISGLNHIKSREHNLPTAWGDKVVSAYYEDDFKF
Ga0335000_0002181_4303_4545F008358GAGMSISYIYFIIFFCVAYLIITDQSVAKGFYMLTQLARVQYEKVKWWVRHSPSNIFVRWLIHRRSMKLAKELMEELAEKNKD
Ga0335000_0002181_801_980F077968AGGAGGMTDTWKKWTIWTSIHLFEYCVYSWRNHMWNHLDGYPNEERMRKLFWYYLNYGHANTYYD
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