Basic Information | |
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Taxon OID | 3300034063 Open in IMG/M |
Scaffold ID | Ga0335000_0002181 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16494 |
Total Scaffold Genes | 32 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (50.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001881 | Metagenome / Metatranscriptome | 622 | Y |
F008358 | Metagenome / Metatranscriptome | 334 | Y |
F013889 | Metagenome / Metatranscriptome | 267 | Y |
F017818 | Metagenome / Metatranscriptome | 238 | Y |
F077968 | Metagenome / Metatranscriptome | 117 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335000_0002181_1509_1769 | F017818 | GAG | MKTEMNKDAYYDWIAENDTYPEHSHKFFVALYTKYEGIEGYHRYLGPFDTREEAKVFAADYKDKYTKPGFISMTRIFAMCEVVKDT |
Ga0335000_0002181_2458_2655 | F001881 | AGAAGG | MSDRAKEFMSAVWEQRNNQGADTEEKLVAAILSIAAEYVRSYTAQNDLIVLDKNDLLQLAEELKQ |
Ga0335000_0002181_4048_4272 | F013889 | GAGG | MSRTFRRTEGMHRYAYRFPHTFSEIRQLDGILHEEDLEGLPISGLNHIKSREHNLPTAWGDKVVSAYYEDDFKF |
Ga0335000_0002181_4303_4545 | F008358 | GAG | MSISYIYFIIFFCVAYLIITDQSVAKGFYMLTQLARVQYEKVKWWVRHSPSNIFVRWLIHRRSMKLAKELMEELAEKNKD |
Ga0335000_0002181_801_980 | F077968 | AGGAGG | MTDTWKKWTIWTSIHLFEYCVYSWRNHMWNHLDGYPNEERMRKLFWYYLNYGHANTYYD |
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