NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335000_0001692

Scaffold Ga0335000_0001692


Overview

Basic Information
Taxon OID3300034063 Open in IMG/M
Scaffold IDGa0335000_0001692 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18796
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (58.73%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008402Metagenome / Metatranscriptome334Y
F008943Metagenome / Metatranscriptome325Y
F036765Metagenome / Metatranscriptome169Y
F037700Metagenome / Metatranscriptome167Y
F071163Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0335000_0001692_1255_1479F008943GGAGGMKLDGFDWAILSIPIVLTILIGTIAYDDQQERITFQQTYNKNLECRQALKDQTMARVNDICGPFPQIKDFTGGN
Ga0335000_0001692_2800_3018F037700AGGAGMKKYRIKKETYGNATKYFPQERWFFRWFNIFAFDVYFDGGYDTLEKAQKQLCEYCKGTVVEYLNFDPIEDCK
Ga0335000_0001692_3470_3646F071163AGGAGMTKTQKALERVIIELDSWCDNWTPTSYNDPRISLRQIADRARNVLVEEKNDLRSSNLG
Ga0335000_0001692_7005_7202F008402N/AMEISTQIRIQQHEGYYYTVEDTHLDVGCEGCTISIWADGKRGEYICMDKEEALAIADAIYKLFKN
Ga0335000_0001692_7948_8274F036765AGGAGMTIKATELLKLFTKAKQLDLSVEVCEDKDDDYVIRIYEMFRSEGFDEKMFITQKGESNWNKASYTIDGMMDILDEQLEEKRQEKIKEQKRQELLARLTDFEKDLLGVK
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